PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_343A252DC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1128aa    MW: 125968 Da    PI: 6.5367
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_343A252DC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.9e-23119220199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  Traes_7DL_343A252DC.1 119 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVI 204
                            99*****************************954.4444.48********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++++l+++++r+
  Traes_7DL_343A252DC.1 205 FV--RDERQQLLLGIRRA 220
                            **..4577788***9997 PP

2Auxin_resp117.89.1e-39245328183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g++dldpvrW+nS+Wr+L+
  Traes_7DL_343A252DC.1 245 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 328
                            79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-42108248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41111234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-19118210No hitNo description
PfamPF023627.4E-21119220IPR003340B3 DNA binding domain
SMARTSM010197.4E-23119221IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899119221IPR003340B3 DNA binding domain
PfamPF065072.3E-33245328IPR010525Auxin response factor
PfamPF023095.0E-109921079IPR033389AUX/IAA domain
PROSITE profilePS5174527.1669941078IPR000270PB1 domain
SuperFamilySSF542772.94E-710091073No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1128 aa     Download sequence    Send to blast
MCQEGEKKAP AINSDLWHAC AGPLVQLPPA GSLVVYFPQG HSEQVAASMQ KDVDAHVPNY  60
PNLPSKLICL LHNITLHADL ETDEVYAQMT LQPVTSYGKE ALQLSELALK QARPQNEFFC  120
KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQEIQ ARDLHDNVWT FRHIYRGQPK  180
RHLLTTGWSL FVSGKRLFAG DSVIFVRDER QQLLLGIRRA NRQPTNISSS VLSSDSMHIG  240
ILAAAAHAAA NNSPFTIFYN PRASPTEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEELG  300
TRRYMGTITG INDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VTAPFFICPP  360
PFFGAKRPRQ LDDESSEMEN LLKRAMPWLG EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ  420
SSSFANTAMQ SEYLRSITNP SMQNIGSGDL SRQLCLQNQL LQQNNMQFNT PKLPQQMQPN  480
NELSKAALPL NQNGASIKPE EQTQDASNFQ RQQQSMNYAL PLSQAQTSLA QAQVLPAVSQ  540
PLLSHQQQQH HHHQQQQQHQ QQEQQHQQQQ QQQKFLQQQQ LLLQQQQLQQ HQHQLQQQQQ  600
QQLGKMPAQL PNLSNQQLQL SDQQLQLQLL QKLQQQQQSL LSQPGVTLAQ LPLIQEQQKL  660
LMDMQQQLSS SHSLSQQQMM PQQSTKIPSQ VASLPPPMQP DTTHQKLPQK QALPADTLEA  720
AIPTTTSHKF SSANGSPLRM PGATHSVVTE EIPSCSTSPS TANGNHLLQP VPGRDQYSSM  780
INTEKAPHST APMSVPSSLD AVTGAQRMTK ELPKLNSNVK QNMMPSKLPN GGAGPQNFAN  840
NAPPTDYLET ASSATSVWLS QADGLLHPNF PMTNFSQQQL FKDAPPDTEI PAEIPSNNAL  900
FGISNDGHVG FPMVTDDFLT NGIDAVKYEN HISTDIDNNY RIPKDAQQEI SSSMVSQSFG  960
ASDMAFNSID SGINDGAFLN KSSWPPAPPV KRMRTFTKVY KRGAVGRSID ISQYAGYEEL  1020
KHALARMFSI EGQLEERQRI GWKLVYRDHE DDILLLGDDP WEEFVNCVKC IRILSPQEVQ  1080
QMSLDGDLGS SVVPNQACSS SEGGGNAWRA RCDQNSGNPS TGSYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-168334943388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3697130.0AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563519.10.0PREDICTED: auxin response factor 19-like
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLW5HYM50.0W5HYM5_WHEAT; Auxin response factor
STRINGBRADI1G34340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]